Laboratorio Nacional de Apoyo Tecnológico a las Ciencias Genómicas

Publicaciones donde colaboran uno o mas miembros de la UUSMB

Artículo:

Zarate,S., Taboada,B., Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica,N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., Alvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S. & Arias,C.F. The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico. Microbiology Spectrum 10[2], e0224021. 2022.

https://doi.org/10.1128/spectrum.02240-21

Artículo:

Vazquez-Chacon,C.A., Rodriguez-Gaxiola,F.J., Sanchez-Flores,A., Montano,S., Bello-Rios,C., Fonseca-Coronado,S., Lopez-Carrera,C.F., Martinez-Guarneros,A., Parra-Unda,R., Garcia-Magallanes,N., rambula-Meraz,E., Escobar-Gutierrez,A., Cruz-Rivera,M. & Lopez-Duran,P.A. Intra-host genetic population diversity: Role in emergence and persistence of drug resistance among Mycobacterium tuberculosis complex minor variants. Infection, Genetics and Evolution 101, 105288. 2022.

https://doi.org/10.1016/j.meegid.2022.105288

Artículo:

Taboada,B., Zarate,S., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica,N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B., Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S. & Arias,C.F. Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico. Viruses 14[6], 1165. 2022.

https://doi.org/10.3390/v14061165

Artículo:

Sanchez-Reyes,A., Breton-Deval,L., Mangelson,H., Salinas-Peralta,I. & Sanchez-Flores,A. Hi-C deconvolution of a textile dye-related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes. International Microbiology 25, 99-110. 2022.

https://doi.org/10.1007/s10123-021-00189-7

Artículo:

Rojas-Vargas,J., Adaya,L., Silva-Jimenez,H., Licea-Navarro,A.F., Sanchez-Flores,A., Gracia,A. & Pardo-Lopez,L. (2022) Oil-degrading bacterial consortium from Gulf of Mexico designed by a factorial method, reveals stable population dynamics. Frontiers in Marine Science, 9.

https://www.frontiersin.org/articles/10.3389/fmars.2022.962071/full

Artículo:

Perelman,C., Fastlicht,A., Sanchez-Flores,A. & Wegman-Ostrosky,T. Superspreading event of Covid-19 in adolescents: is there a difference between the vaccinated and the unvaccinated? Salud Publica de Mexico 64[5, sept-oct], 446-447. 2022.

https://doi.org/10.21149/13456

Artículo:

Orbe-Orihuela,Y.C., Godoy-Lozano,E.E., Lagunas-Martinez,A., Castaneda-Marquez,A.C., Murga-Garrido,S., Diaz-Benitez,C.E., Ochoa-Leyva,A., Cornejo-Granados,F., Cruz,M., Estrada,K., Bermudez-Morales,V.H., Sanchez-Flores,A. & Burguete-Garcia,A.I. Association of Gut Microbiota with Dietary-dependent Childhood Obesity. Archives of Medical Research 53[4], 407-415. 2022.

https://doi.org/10.1016/j.arcmed.2022.03.007

Artículo:

Nabor-Romero,O., Rojas-Martinez,R.I., Zavaleta-Mejia,E., Vega-Arreguin,J., Ochoa-Martinez,D., Sanchez-Flores,A. & Romo-Castillo,M. Transcriptomic Analysis of the CM-334/P. capsici/N. aberrans Pathosystem to Identify Components in Plant Resistance and Resistance-Breaking Responses. 13[2], 151-162. 2022.

https://doi.org/10.3390/ijpb13020015

Artículo:

Murga-Garrido,S.M., Orbe-Orihuela,Y.C., Diaz-Benitez,C.E., Castaneda-Marquez,A.C., Cornejo-Granados,F., Ochoa-Leyva,A., Sanchez-Flores,A., Cruz,M., Burguete-Garcia,A.I. & Lagunas-Martinez,A. Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity. Child. 9[2], 148. 2022.

https://doi.org/10.3390/children9020148

Artículo:

Lonardi,S., Singh,P., Liang,Q., Vydyam,P., Khabirova,E., Fang,T., Gihaz,S., Thekkiniath,J., Munshi,M., Abel,S., Batugedara,G., Gupta,M., Lu,X.M., Lenz,T., Chakravarty,S., Cornillot,E., Hu,Y., Ma,W., Gonzalez,L.M., Sanchez,S., Sanchez-Flores,A., Estrada,K., Harb,O.S., Le Roch,K.G. & Ben Mamoun,C. (2022) Decoding The Nuclear Genome of The Human Pathogen Babesia duncani Shed Light on its Virulence, Drug Susceptibility and Evolution among Apicomplexa. bioRxiv, Preprint posted May 09.

https://www.biorxiv.org/content/10.1101/2022.05.09.491209v1

Artículo:

Espositi,M.D., Geiger,O., Sanchez-Flores,A. & Espositi,M.D. (2022) On the bacterial ancestry of mitochondria: new insights with triangulated approaches. bioRxiv, Preprint posted May 16.

https://www.biorxiv.org/content/10.1101/2022.05.15.491939v1

Artículo:

Corona-Herrera,G.A., Navarrete-Ramirez,P., Sanchez-Flores,F.A., Jimenez-Jacinto,V., Martinez-Palacios,C.A., Palomera-Sanchez,Z., Volkoff,H. & Martinez-Chavez,C.C. Shining light on the transcriptome: Molecular regulatory networks leading to a fast-growth phenotype by continuous light in an environmentally sensitive teleost (Atherinopsidae). Journal of photochemistry and photobiology.B, Biology 235, 112550. 2022.

https://doi.org/10.1016/j.jphotobiol.2022.112550

Artículo:

Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Boukadida,C., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A. & Escalera-Zamudio,M. (2022) Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico_. bioRxiv, Preprint posted August 10.

https://www.biorxiv.org/content/10.1101/2022.07.05.498834v2.article-info

Artículo:

Boukadida,C., Taboada,B., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I., Avila-Rios,S. & Arias,C.F. Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico. Microbiology Spectrum 10[1], e01249-21. 2022.

https://doi.org/10.1128/spectrum.01249-21

Artículo:

Valencia-Morales,M.D.P., Sanchez-Flores,A., Colin-Castelan,D., Alvarado-Caudillo,Y., Fragoso-Bargas,N., Lopez-Gonzalez,G., Pena-Lopez,T., Ramirez-Nava,M., de la Rocha,C., Rodriguez-Rios,D., Lund,G. & Zaina,S. Somatic genetic mosaicism in the apolipoprotein E-null mouse aorta. Thrombosis and Haemostasis 121[11], 1541-1553. 2021.

https://doi.org/10.1055/a-1414-4840

Artículo:

Taboada-Ramirez,B., Zarate,S., Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S. & Arias,C.F. (2021) Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic. Viruses, 13, 2161.

https://search.bvsalud.org/global-literature-on-novel-coronavirus-2019-ncov/resource/es/covidwho-1488756

Artículo:

Santana,F.L., Estrada,K., Ortiz,E. & Corzo,G. (2021) Reptilian á-defensins: expanding the repertoire of known crocodylian peptides. Peptides, 136, 170473.

https://doi.org/10.1016/j.peptides.2020.170473

Artículo:

Santana,F.L., Arenas,I., Haney,E.F., Estrada,K., Hancock,R.E.W. & Corzo,G. Identification of a crocodylian Iý-defensin variant from Alligator mississippiensis with antimicrobial and antibiofilm activity. Peptides 141, 170549. 2021.

https://doi.org/10.1016/j.peptides.2021.170549

Artículo:

Mora-Gonzalez,P.C., Espinosa-Luna,G., Ramirez-Higuera,A., Pena-Montes,C., Valerio-Alfaro,G., Sanchez-Flores,A., Quintana-Castro,R., Sanchez-Otero,M.G. & Oliart-Ros,R.M. Metagenomic Approach to Bacterial Diversity and Lipolytic Enzyme's Genes from a Steam Soil of Los Humeros Geothermal Field (Puebla, M‚xico). Geomicrobiology Journal 38[4], 304-314. 2021.

https://doi.org/10.1080/01490451.2020.1852452

Artículo:

Gonzalez,L.M., Sevilla,E., Fernandez-Garcia,M., Sanchez-Flores,A. & Montero,E. (2021) Integration of Genomic and Transcriptomic Data to Elucidate Molecular Processes in Babesia divergens. Parasite Genomics pp. 199-215.

https://doi.org/10.1007/978-1-0716-1681-9_12

Artículo:

Fernandez-Garcia,M., Sanchez-Flores,A., Gonzalez,L.M., Barbas,C., Rey-Stolle,M.F., Sevilla,E., Garcia,A. & Montero,E. (2021) Integration of Functional Genomic, Transcriptomic, and Metabolomic Data to Identify Key Features in Genomic Expression, Metabolites, and Metabolic Pathways of Babesia divergens. Parasite Genomics pp. 217-249.

https://doi.org/10.1007/978-1-0716-1681-9_13

Artículo:

Fajardo-Rebollar,E., Estrada,K., Grande,R., Ek Ramos,M.J., Ruiz-Vargas,G., Villegas-Torres,O.G., Juarez,A., Sanchez-Flores,A. & Diaz-Camino,C. Bacterial and fungal microbiome profiling in chilhuacle negro chili (Capsicum annuum L.) associated with fruit rot disease. Plant Disease 105[9]. 2021.

https://doi.org/10.1094/PDIS-09-20-2098-RE

Artículo:

Escobar-Zepeda,A., Rosas-Escobar,P., Marquez-Valdelamar,L., de la Torre,P., Partida-Martinez,L.P., Remegaldo,R., Sanchez-Flores,A. & Vergara,F. Distinctive prokaryotic microbiomes in sympatric plant roots from a Yucatan cenote. BMC Research Notes 14[1], 333. 2021.

https://doi.org/10.1186/s13104-021-05746-x

Artículo:

Arevalos-Sanchez,M.M., Maynez-Perez,A.O., Rodriguez-Almeida,F.A., Martinez-Quintana,J.A., Sanchez-Flores,F.A., Felix-Portillo,M., Chavez-Martinez,A., Olvera-Garcia,M.E., Ruiz-Barrera,O. & Corral-Luna,A. In vitro assessment of two novel Cellulases from Trabulsiella odontotermitis for agricultural waste utilization. BMC Biotechnology 21[1], 26. 2021.

https://doi.org/10.1186/s12896-021-00687-6

Artículo:

Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V.H., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Perez-Padilla,R., Lopez Martinez,I., Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E. & Arias,C.F. (2020) Genomic analysis of early SARS-CoV-2 strains intrduced in Mexico. bioRxiv, Preprint posted May 30, 120402.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7459550/

Artículo:

Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Perez-Padilla,R., Lopez-Martinez,I., Avila-Rios,S., Ruiz-Palacios,G., Ramirez-Gonzalez,J.E. & Arias,C.F. Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico. Journal of Virology 94[18]. 2020.

https://doi.org/10.1128/JVI.01056-20

Artículo:

Sanchez-Reyes,A., Breton-Deval,L., Mangelson,H. & Sanchez-Flores,A. Draft genome sequence of "Candidatus Afipia apatlaquensis" sp. nov., IBT-C3, a potential strain for decolorization of textile dyes. BMC Research Notes 13[1], 265. 2020.

https://doi.org/10.1186/s13104-020-05117-y

Artículo:

Peralta-Garcia,I., Gonzalez-Munoz,F., Rodriguez-Alegria,M.E., Sanchez-Flores,A. & Lopez-Munguia,A. Evolution of Fructans in Aguamiel (Agave Sap) During the Plant Production Lifetime. Front.Nutr. 7, 566950. 2020.

https://doi.org/10.3389/fnut.2020.566950

Artículo:

Narvaez-Barragan,D.A., de,S.A., Rodriguez,M., Estrada,K., Tovar-Herrera,O.E. & Martinez-Anaya,C. Analysis of two Mexican Pectobacterium brasiliense strains reveals an inverted relationship between c-di-GMP levels with exopolysaccharide production and swarming motility. Microbiological Research 235, 126427. 2020.

https://doi.org/10.1016/j.micres.2020.126427

Artículo:

Nabor-Romero,O., Rojas-Martinez,R.I., Ochoa-Martinez,D.L., Vega-Arreguin,J., Sanchez-Flores,F.A. & Zavaleta-Mejia,E. Avances en el conocimiento sobre el rompimiento de la resistencia de chile cm-334 (capsicum annuum l.) A phytophthora capsici por nacobbus aberrans. Nematropica 50[1], 45-58. 2020.

https://journals.flvc.org/nematropica/article/view/123479

Artículo:

Hernandez-Valle,J., Sanchez-Flores,A., Poggio,S., Dreyfus,G. & Camarena,L. The CtrA regulon of Rhodobacter sphaeroides favors adaptation to a particular life style. Journal of Bacteriology 202[7], 00678-19. 2020.

https://doi.org/10.1128/JB.00678-19

Artículo:

Escobar-Zepeda,A., Montor,J.J., Olvera,C., Sanchez-Flores,A. & Lopez-Munguia,A. An Extended Taxonomic Profile and Metabolic Potential Analysis of Pulque Microbial Community Using Metagenomics. Journal of Food Science & Technology 5[2], 83-97. 2020.

https://doi.org/10.25177/JFST.5.2.RA.10637

Artículo:

Chincoya,D.A., Sanchez-Flores,A., Estrada,K., Diaz-Velasquez,C.E., Gonzalez-Rodriguez,A., Vaca-Paniagua,F., Davila,P., Arias,S. & Solorzano,S. Identification of High Molecular Variation Loci in Complete Chloroplast Genomes of Mammillaria (Cactaceae, Caryophyllales). Genes (Basel) 11[7], 830. 2020.

https://doi.org/10.3390/genes11070830

Artículo:

Breton-Deval,L., Sanchez-Reyes,A., Sanchez-Flores,A., Juarez,K., Salinas-Peralta,I. & Mussali-Galante,P. Functional Analysis of a Polluted River Microbiome Reveals a Metabolic Potential for Bioremediation. Microorganisms 8[4], 554. 2020.

https://doi.org/10.3390/microorganisms8040554

Artículo:

Solorzano,S., Chincoya,D.A., Sanchez-Flores,A., Estrada,K., Diaz-Velasquez,C.E., Gonzalez-Rodriguez,A., Vaca-Paniagua,F., Davila,P. & Arias,S. De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales). Plants (Basel) 8[10], 392. 2019.

https://doi.org/10.3390/plants8100392

Artículo:

Solano de la Cruz,M.T., dame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L., Escobar-Hernandez,E.E. & Luna-Rodriguez,M. Increase in ribosomal proteins activity: Translational reprogramming in Vanilla planifolia Jacks., against Fusarium infection. bioRxiv Preprint posted June 05, 2019, 660860. 2019.

https://doi.org/10.1101/660860

Artículo:

Solano de la Cruz,M.T., dame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L.G., Escobar-Hernandez,E.E. & Luna-Rodriguez,M. Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae. BMC Genomics 20[1], 826. 2019.

https://doi.org/10.1186/s12864-019-6229-5

Artículo:

Ramirez-Carreto,S., Vera-Estrella,R., Portillo-Bobadilla,T., Licea-Navarro,A., Bernaldez-Sarabia,J., Rudino-Pinera,E., Verleyen,J.J., Rodriguez,E. & Rodriguez-Almazan,C. Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869. Marine Drugs 17[8], 436. 2019.

https://doi.org/10.3390/md17080436

Artículo:

Jimenez-Jacinto,V., Sanchez-Flores,A. & Vega-Alvarado,L. Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis. Frontiers in Genetics 10, 279. 2019.

https://doi.org/10.3389/fgene.2019.00279

Artículo:

Gonzalez,L.M., Estrada,K., Grande,R., Jimenez-Jacinto,V., Vega-Alvarado,L., Sevilla,E., Barrera,J., Cuesta,I., Zaballos,A., Bautista,J.M., Lobo,C.A., Sanchez-Flores,A. & Montero,E. Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes. PLoS Neglected Tropical Diseases 13[8], e0007680. 2019.

https://doi.org/10.1371/journal.pntd.0007680

Artículo:

Garcia-Lopez,G., Avila-Gonzalez,D., Garcia-Castro,I.L., Flores-Herrera,H., Molina-Hernandez,A., Portillo,W., Diaz-Martinez,N.E., Sanchez-Flores,A., Verleyen,J., Merchant-Larios,H. & Diaz,N.F. Pluripotency markers in tissue and cultivated cells in vitro of different regions of human amniotic epithelium. Experimental Cell Research 375[1], 31-41. 2019.

https://doi.org/10.1016/j.yexcr.2018.12.007

Artículo:

Breton-Deval,L., Sanchez-Flores,A., Juarez,K. & Vera-Estrella,R. Integrative study of microbial community dynamics and water quality along The Apatlaco River. Environmental Pollution 255[Pt 1], 113158. 2019.

https://doi.org/10.1016/j.envpol.2019.113158

Artículo:

Breton-Deval,L., Sanchez-Reyes,A., Sanchez-Flores,A., Juarez,K. & Mussali-Galante,P. (2019) One step towards bioremediating a heavily polluted river: Metagenomic insights on the function of microbial community. bioRxiv, Preprint posted June 21, 2019, 675876.

https://www.biorxiv.org/content/10.1101/675876v1.full

Artículo:

Sanchez-Pozos,K., Ortiz-Lopez,M.G., Pena-Espinoza,B.I., Granados-Silvestre,M.A., Jimenez-Jacinto,V., Verleyen,J., Tekola-Ayele,F., Sanchez-Flores,A. & Menjivar,M. Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes. Molecular Genetics and Genomics 293[5], 1205-1216. 2018.

https://doi.org/10.1007/s00438-018-1453-2

Artículo:

Pena-Cardena,A., Grande,R., Sanchez,J., Tabashnik,B.E., Bravo,A., Soberon,M. & Gomez,I. The C-terminal protoxin domain of Bacillus thuringiensis Cry1Ab toxin has a functional role in binding to GPI-anchored receptors in the insect midgut. Journal of Biological Chemistry 293[52], 20263-20272. 2018.

https://doi.org/10.1074/jbc.RA118.005101

Artículo:

Olvera-Garcia,M., Sanchez-Flores,A. & Quirasco-Baruch,M. Genomic and functional characterisation of two Enterococcus strains isolated from Cotija cheese and their potential role in ripening. Applied Microbiology and Biotechnology 102[5], 2251-2267. 2018.

https://doi.org/10.1007/s00253-018-8765-3

Artículo:

Munoz-Medina,J.E., Garcia-Knight,M.A., Sanchez-Flores,A., Monroy-Munoz,I.E., Grande,R., Esbjornsson,J., Santacruz-Tinoco,C.E. & Gonzalez-Bonilla,C.R. Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein. PLoS ONE 13[12], e0209292. 2018.

https://doi.org/10.1371/journal.pone.0209292

Artículo:

Garcia,C.F., Pedrini,N., Sanchez-Paz,A., Reyna-Blanco,C.S., Lavarias,S., Muhlia-Almazan,A., Fernandez-Gimenez,A., Laino,A., de-la-Re-Vega,E., Lukaszewicz,G., Lopez-Zavala,A.A., Brieba,L.G., Criscitello,M.F., Carrasco-Miranda,J.S., Garcia-Orozco,K.D., Ochoa-Leyva,A., Rudino-Pinera,E., Sanchez-Flores,A. & Sotelo-Mundo,R.R. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response. Marine Genomics 37, 74-81. 2018.

https://doi.org/10.1016/j.margen.2017.08.009

Artículo:

Garcia-Maldonado,J.Q., Escobar-Zepeda,A., Raggi,L., Bebout,B.M., Sanchez-Flores,A. & Lopez-Cortes,A. Bacterial and archaeal profiling of hypersaline microbial mats and endoevaporites, under natural conditions and methanogenic microcosm experiments. Extremophiles 22[6], 903-916. 2018.

https://doi.org/10.1007/s00792-018-1047-2

Artículo:

Contreras-Castro,L., Maldonado,L.A., Quintana,E.T., Raggi,L. & Sanchez-Flores,A. Draft Genome Sequence of Two Marine Plantactinospora spp. from the Gulf of California. Microbiology Resource Announcements 6[21], UNSP. 2018.

https://doi.org/10.1128/genomeA.00436-18

Artículo:

Chowdhury-Paul,S., Pando-Robles,V., Jimenez-Jacinto,V., Segura,D., Espin,G. & Nunez,C. Proteomic analysis revealed proteins induced upon Azotobacter vinelandii encystment. Journal of Proteomics 181, 47-59. 2018.

https://doi.org/10.1016/j.jprot.2018.03.031

Artículo:

Carrillo-Tapia,E., Garcia-Garcia,E., Herrera-Gonzalez,N.E., Yamazaki-Nakashimada,M.A., Staines-Boone,A.T., Segura-Mendez,N.H., Scheffler-Mendoza,S.C., Farrill-Romanillos,O., Gonzalez-Serrano,M.E., Rodriguez-Alba,J.C., Santos-Argumedo,L., Berron-Ruiz,L., Sanchez-Flores,A. & Lopez-Herrera,G. Delayed diagnosis in X-linked agammaglobulinemia and its relationship to the occurrence of mutations in BTK non-kinase domains. Expert Review of Clinical Immunology 14[1], 83-93. 2018.

https://doi.org/10.1080/1744666X.2018.1413349

Artículo:

Barreto-Curiel,F., Ramirez-Puebla,S.T., Ringo,E., Escobar-Zepeda,A., Godoy-Lozano,E., Vazquez-Duhalt,R., Sanchez-Flores,A. & Viana,M.T. Effects of extruded aquafeed on growth performance and gut microbiome of juvenile Totoaba macdonaldi. Animal Feed Science and Technology 245, 91-103. 2018.

https://doi.org/10.1016/j.anifeedsci.2018.09.002

Artículo:

Sandoval-Azuara,S.E., Perea-Jacobo,R., Muniz-Salazar,R., Robbe-Austerman,S., Perera-Ortiz,A., Lopez-Valencia,G., Bravo,D.M., Sanchez-Flores,A., Miranda-Guzman,D., Flores-Lopez,C.A., Zenteno-Cuevas,R., Laniado-Laborin,R., Lafarga de la,C.F. & Stuber,T.P. Whole genome sequencing of Mycobacterium bovis to obtain molecular fingerprints in human and cattle isolates from Baja California, Mexico. International Journal of Infectious Diseases 63, 48-56. 2017.

https://doi.org/10.1016/j.ijid.2017.07.012

Artículo:

Ortiz-Berrocal,M., Lozano,L., Sanchez-Flores,A., Nava,N., Hernandez,G. & Reddy,P.M. Expression in rice of an autoactive variant of Medicago truncatula DMI3, the Ca+2/calmodulin-dependent protein kinase from the common symbiotic pathway modifies root transcriptome and improves mycorrhizal colonization. Plant Biotechnology Reports 11[5], 271-287. 2017.

http://dx.doi.org/10.1007/s11816-017-0449-4

Artículo:

Vera-Ponce De Leon,A., Sanchez-Flores,A., Rosenblueth,M. & Martinez-Romero,E. Fungal Community Associated with Dactylopius (Hemiptera: Coccoidea: Dactylopiidae) and Its Role in Uric Acid Metabolism. Frontiers in Microbiology 7, 954. 2016.

http://dx.doi.org/10.3389/fmicb.2016.00954

Artículo:

Sanchez-Flores,A., Penazola,F., Carpinteyro-Ponce,J., Nazario-Yepiz,N., Abreu-Goodger,C., Machado,C.A. & Markow,T.A. Genome Evolution in Three Species of Cactophilic Drosophila. G3: Genes, Genomes, Genetics 6[10], 3097-3105. 2016.

http://dx.doi.org/10.1534/g3.116.033779

Artículo:

Rodriguez-Anaya,L.Z., Gonzalez-Galaviz,J.R., Casillas-Hernandez,R., Lares-Villa,F., Estrada,K., Ibarra-Gamez,J.C. & Sanchez-Flores,A. Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico. Genome Announcements 4[2]. 2016.

http://dx.doi.org/10.1128/genomeA.01674-15

Artículo:

Rodriguez-Anaya,L.Z., Ibarra-Gamez,J.C., Lares-Villa,F., Casillas-Hernandez,R., Sanchez-Flores,A. & Gonzalez-Galaviz,J.R. Analysis of repeated compound units in ORF94 of white spot syndrome virus isolated from Litopenaeus vannamei from outbreak and non-outbreak shrimp farms in Sonora, Mexico. Latin American Journal of Aquatic Research 44[4], 850-854. 2016.

http://dx.doi.org/10.3856/vol44-issue4-fulltext-21

Artículo:

Hunt,V.L., Tsai,I.J., Coghlan,A., Reid,A.J., Holroyd,N., Foth,B.J., Tracey,A., Cotton,J.A., Stanley,E.J., Beasley,H., Bennett,H.M., Brooks,K., Harsha,B., Kajitani,R., Kulkarni,A., Harbecke,D., Nagayasu,E., Nichol,S., Ogura,Y., Quail,M.A., Randle,N., Xia,D., Brattig,N.W., Soblik,H., Ribeiro,D.M., Sanchez-Flores,A., Hayashi,T., Itoh,T., Denver,D.R., Grant,W., Stoltzfus,J.D., Lok,J.B., Murayama,H., Wastling,J., Streit,A., Kikuchi,T., Viney,M. & Berriman,M. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics 48, 299-307. 2016.

http://dx.doi.org/10.1038/ng.3495

Artículo:

Gonzalez,G., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Olvera,M., Morett,E. & Juarez,K. Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors. Fems Microbiology Letters 363[17], Article. 2016.

http://dx.doi.org/10.1093/femsle/fnw175

Artículo:

Escobar-Zepeda,A., Sanchez-Flores,A. & Quirasco-Baruch,M. Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiology 57, 116-127. 2016.

http://dx.doi.org/10.1016/j.fm.2016.02.004

Artículo:

Bedoya-Lopez,A., Estrada,K., Sanchez-Flores,A., Ramirez,O.T., Altamirano,C., Segovia,L., Miranda-Rios,J., Trujillo-Roldan,M.A. & Valdez-Cruz,N.A. Effect of Temperature Downshift on the Transcriptomic Responses of Chinese Hamster Ovary Cells Using Recombinant Human Tissue Plasminogen Activator Production Culture. PLoS ONE 11[3], e0151529. 2016.

http://dx.doi.org/10.1371/journal.pone.0151529

Artículo:

Velez,P., Alejandri-Ramirez,N.D., Gonzalez,M.C., Estrada,K.J., Sanchez-Flores,A. & Dinkova,T.D. Comparative Transcriptome Analysis of the Cosmopolitan Marine Fungus Corollospora maritima Under Two Physiological Conditions. G3: Genes, Genomes, Genetics 5[9], 1805-1814. 2015.

http://dx.doi.org/10.1534/g3.115.019620

Artículo:

Vega-Alvarado,L., Gomez-Angulo,J., Escalante-Garcia,Z., Grande,R., Gschaedler-Mathis,A., Amaya-Delgado,L., Sanchez-Flores,A. & Arrizon,J. High-Quality Draft Genome Sequence of Candida apicola NRRL Y-50540. Genome Announcements 3[3], correction. 2015.

http://dx.doi.org/10.1128/genomeA.00437-15

Artículo:

Valencia-Morales,M.P., Zaina,S., Heyn,H., Carmona,F.J., Varol,N., Sayols,S., Condom,E., Ramirez-Ruz,J., Gomez,A., Moran,S., Lund,G., Rodriguez-Rios,D., Lopez-Gonzalez,G., Ramirez-Nava,M., de la Rocha,C., Sanchez-Flores,A. & Esteller,M. The DNA methylation drift of the atherosclerotic aorta increases with lesion progression. BMC Medical Genomics 8[1], 85. 2015.

http://dx.doi.org/10.1186/s12920-015-0085-1

Artículo:

Sanchez-Flores,A. Unidad de Secuenciaci¢n Masiva y Bioinform tica, a la vanguardia de la ciencia. Biotecnolog¡a en Movimiento.Revista de divulgaci¢n del Instituto de Biotecnolog¡a de la UNAM 2, 23-24. 2015.

https://biotecnologiaibtunam.files.wordpress.com/2015/09/biotecnologia_en_movimiento_no_2.pdf

Artículo:

Olvera-Garcia,M., Fontes-Perez,H., Chavez-Martinez,A., Ruiz-Barrera,O., Rodriguez-Almeida,F.A., Sanchez-Flores,A. & Corral-Luna,A. Draft Genome Sequences for Five Strains of Trabulsiella odontotermitis, Isolated from Heterotermes sp. Termite Gut. Genome Announcements 3[6], art. 2015.

http://dx.doi.org/10.1128/genomeA.01289-15

Artículo:

Gomez-Angulo,J., Vega-Alvarado,L., Escalante-Garcia,Z., Grande,R., Gschaedler-Mathis,A., Amaya-Delgado,L., Arrizon,J. & Sanchez-Flores,A. Genome Sequence of Torulaspora delbrueckii NRRL Y-50541, Isolated from Mezcal Fermentation. Genome Announcements 3[4]. 2015.

http://dx.doi.org/10.1128/genomeA.00438-15

Artículo:

Fontes-Perez,H., Olvera-Garcia,M., Chavez-Martinez,A., Rodriguez-Almeida,F.A., Arzola-Alvarez,C.A., Sanchez-Flores,A. & Corral-Luna,A. Genome Sequence of Citrobacter sp. CtB7.12, Isolated from the Gut of the Desert Subterranean Termite Heterotermes aureus. Genome Announcements 3[6], art. 2015.

http://dx.doi.org/10.1128/genomeA.01290-15

Artículo:

Escobar-Zepeda,A., Vera-Ponce De Leon,A. & Sanchez-Flores,A. The road to metagenomics: from microbiology to DNA sequencing technologies and bioinformatics. Frontiers in Genetics 6. 2015.

http://dx.doi.org/10.3389/fgene.2015.00348

Artículo:

Dautt-Castro,M., Ochoa-Leyva,A., Contreras-Vergara,C.A., Pacheco-Sanchez,M.A., Casas-Flores,S., Sanchez-Flores,A., Kuhn,D.N. & Islas-Osuna,M.A. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening. Frontiers in Plant Science 6. 2015.

http://dx.doi.org/10.3389/fpls.2015.00062

Artículo:

Calva,E., Silva,C., Zaidi,M.B., Sanchez-Flores,A., Estrada,K., Silva,G.G., Soto-Jimenez,L.M., Wiesner,M., Fernandez-Mora,M., Edwards,R.A. & Vinuesa,P. Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype. Genome Announcements 3[3], e00663-15. 2015.

http://dx.doi.org/10.1128/genomeA.00663-15

Artículo:

Soto-Jimenez,L.M., Estrada,K., Berriman,M. & Sanchez-Flores,A. GARM: Genome Assembly, Reconciliation and Merging pipeline. Current Topics in Medicinal Chemistry 14[3], 418-424. 2014.

http://dx.doi.org/10.2174/1568026613666131204110628

Artículo:

Sanchez-Flores,A. & Abreu-Goodger,C. A Practical Guide to Sequencing Genomes and Transcriptomes. Current Topics in Medicinal Chemistry 14[3], 398-406. 2014.

http://dx.doi.org/10.2174/1568026613666131204142353

Artículo:

Reid,A.J., Blake,D.P., Ansari,H.R., Billington,K., Browne,H.P., Bryant,J.M., Dunn,M., Hung,S.S., Kawahara,F., Miranda-Saavedra,D., Malas,T., Mourier,T., Naghra,H., Nair,M., Otto,T.D., Rawlings,N.D., Rivailler,P., Sanchez-Flores,A., Sanders,M., Subramaniam,C., Tay,Y.L., Woo,Y., Wu,X., Barrell,B., Dear,P.H., Doerig,C., Gruber,A., Ivens,A.C., Parkinson,J., Rajandream,M.A., Shirley,M.W., Wan,K.L., Berriman,M., Tomley,F.M. & Pain,A. Genomic analysis of the causative agents of coccidiosis in domestic chickens. Genome Research 24, 1676-1685. 2014.

http://dx.doi.org/10.1101/gr.168955.113

Artículo:

Oliveira,P.D., Lima,F.M., Cruz,M.C., Ferreira,R.C., Sanchez-Flores,A., Cordero,E.M., Cortez,D.R., Ferreira,E.R., Briones,M.R., Mortara,R.A., Silveira,J.F. & Bahia,D. Trypanosoma cruzi: Genome characterization of phosphatidylinositol kinase gene family (PIK and PIK-related) and identification of a novel PIK gene. Infection, Genetics and Evolution 25, 157-165. 2014.

http://dx.doi.org/10.1016/j.meegid.2014.03.022

Artículo:

Ghaffari,N., Sanchez-Flores,A., Doan,R., Garcia-Orozco,K.D., Chen,P.L., Ochoa-Leyva,A., Lopez-Zavala,A.A., Carrasco,J.S., Hong,C., Brieba,L.G., Rudino-Pinera,E., Blood,P.D., Sawyer,J.E., Johnson,C.D., Dindot,S.V., Sotelo-Mundo,R.R. & Criscitiello,M.F. Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture. Scientific Reports 4, 7081. 2014.

http://dx.doi.org/10.1038/srep07081

Artículo:

Cuesta,I., Gonzalez,L.M., Estrada,K., Grande,R., Zaballos,A., Lobo,C.A., Barrera,J., Sanchez-Flores,A. & Montero,E. High-Quality Draft Genome Sequence of Babesia divergens, the Etiological Agent of Cattle and Human Babesiosis. Genome Announcements 2[6]. 2014.

http://dx.doi.org/10.1128/genomeA.01194-14

Artículo:

Sanchez-Flores,A. Setting the foundation for helminths systems biology: Sequencing technologies, methodologies and applications. Systems Biomedicine 1[1], 5-11. 2013.

http://dx.doi.org/10.4161/sysb.23113

Artículo:

Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E. & Collado-Vides,J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research 41[D1], D203-D213. 2013.

http://dx.doi.org/10.1093/nar/gks1201

Artículo:

Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E. & Collado-Vides,J. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research 39[Suppl 1], D98-D105. 2011.

http://dx.doi.org/10.1093/nar/gkq1110

Artículo:

Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J. & Morett,E. Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli. PLoS ONE 4[10], e7526. 2009.

http://dx.doi.org/10.1371%2Fjournal.pone.0007526